Geert-Jan Huizing

👋 I'm a PhD student at the Institut Pasteur, supervised by Laura Cantini and Gabriel Peyré. My work focuses on the application of optimal transport to single-cell multiomics.

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Hiring? I am expecting to defend in September and am actively looking for a postdoc or industry position

Publications

Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein

bioRxiv, 2024

GJ Huizing, G Peyré, L Cantini

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Paired single-cell multi-omics data integration with Mowgli

Nature Communications, 2023

GJ Huizing, IM Deutschmann, G Peyré, L Cantini

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Unsupervised Ground Metric Learning using Wasserstein Singular Vectors

International Conference on Machine Learning (ICML), 2022

GJ Huizing, L Cantini, G Peyré

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Optimal transport improves cell-cell similarity inference in single-cell omics data

Bioinformatics, 2022

GJ Huizing, G Peyré, L Cantini

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Education

Ph.D. in computational biology

Institut Pasteur & ENS PSL

2020-2024 (expected)

M2 Data Science (masters’ degree)

Institut Polytechnique de Paris, Paris

2019-2020

Diplôme d'ingénieur (masters’ degree)

Télécom Paris, Paris

2017-2020

MPSI / MP*

Classe préparatoire Masséna, Nice

2015-2017